usefragsph not on
There are 24 ligand heavy atoms
Ligand center of coords (x y z): 3.50141666666667 3.999875 -5.99258333333333
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1673
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 517
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 517
Number of spheres polar: 197, nonpolar: 290, out of current total: 517
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -6.44200 13.49739 -5.60842 13.92965 -15.98608 4.00710
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 155
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 123
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 67
Spheres center of coords (x y z): 4.76985313432836 3.03331268656716 -6.70615492537314
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 2.73463265555907
Final number of output spheres is: 45
Number of polar spheres: 9
Number of nonpolar spheres: 34
Number of spheres that are near neither polar nor nonpolar receptor atoms: 2
Final number of spheres that are from crystallographic ligand: 24