usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 10.9585757575758 -3.25948484848485 24.2393636363636 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1770 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 799 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 797 Number of spheres polar: 157, nonpolar: 485, out of current total: 797 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 1.06435 20.94189 -13.22988 6.74019 14.25520 33.82639 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 427 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 373 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 337 Spheres center of coords (x y z): 12.8009583976261 -4.32569557863501 20.5206739762611 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.94230694225164 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 33