usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 11.4623333333333 0.534740740740741 11.6242592592593 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1437 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 788 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 786 Number of spheres polar: 199, nonpolar: 345, out of current total: 786 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 1.51578 21.42260 -9.43356 10.53181 1.71968 21.54803 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 463 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 397 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 313 Spheres center of coords (x y z): 7.91137242811501 0.682872236421725 12.760609201278 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.02510447165719 Final number of output spheres is: 60 Number of polar spheres: 33 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 27