usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 42.0488888888889 -2.3422962962963 16.5910740740741 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1794 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 630 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 629 Number of spheres polar: 113, nonpolar: 352, out of current total: 629 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 32.06915 51.94210 -12.32949 7.53100 7.07742 26.58581 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 219 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 181 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 149 Spheres center of coords (x y z): 44.2161651006712 -5.21751859060403 20.3418095302013 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.60745002781532 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 27