There are 20 ligand heavy atoms Ligand center of coords (x y z): 5.3076 -0.20225 -5.48065 useligsph not on Starting number of spheres from sph/sph cluster 0: 1246 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 629 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 629 Number of spheres polar: 275, nonpolar: 277, out of current total: 629 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -6.67571 17.26741 -12.14754 11.65417 -17.47970 6.49545 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 259 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 176 No crystallographic spheres present, so determining sphere nearest center of ligand (x y z): 5.3076 -0.20225 -5.48065 Center point: 46 xyz: 5.42094 -0.42694 -5.67955 After continuity checking, number of spheres is: 56 Final number of output spheres is: 56 Number of polar spheres: 13 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 0