usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 5.3076 -0.20225 -5.48065 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1246 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 314 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 314 Number of spheres polar: 83, nonpolar: 195, out of current total: 314 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.63519 15.17212 -10.19600 9.57343 -15.40237 4.48293 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 107 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 86 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 57 Spheres center of coords (x y z): 5.45364245614035 -0.142173157894737 -5.29740754385965 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.76041792754403 Final number of output spheres is: 45 Number of polar spheres: 6 Number of nonpolar spheres: 38 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 20