usefragsph not on
There are 20 ligand heavy atoms
Ligand center of coords (x y z): 5.3076 -0.20225 -5.48065
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1246
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 314
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 314
Number of spheres polar: 83, nonpolar: 195, out of current total: 314
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.63519 15.17212 -10.19600 9.57343 -15.40237 4.48293
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 165
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 141
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 102
Spheres center of coords (x y z): 5.13131862745098 -0.258070882352941 -5.22672284313725
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 1.8179738001164
Final number of output spheres is: 60
Number of polar spheres: 8
Number of nonpolar spheres: 48
Number of spheres that are near neither polar nor nonpolar receptor atoms: 4
Final number of spheres that are from crystallographic ligand: 20