usefragsph not on
There are 20 ligand heavy atoms
Ligand center of coords (x y z): 5.6747 3.076 -5.91535
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1357
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 387
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 387
Number of spheres polar: 129, nonpolar: 216, out of current total: 387
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.29142 15.63395 -6.90853 12.69527 -15.91400 4.03802
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 126
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 96
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 62
Spheres center of coords (x y z): 7.02720983870968 2.87789387096774 -6.35386338709677
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 2.84258307841919
Final number of output spheres is: 45
Number of polar spheres: 7
Number of nonpolar spheres: 35
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 20