usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): -24.1721363636364 3.9255 -5.98254545454545 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1270 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 402 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 402 Number of spheres polar: 158, nonpolar: 211, out of current total: 402 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -34.11578 -14.26765 -6.03430 13.90621 -15.79688 3.99647 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 230 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 174 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 116 Spheres center of coords (x y z): -23.273785 3.49090956896552 -6.39190637931035 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 2.43919949828993 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 22