usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): 19.2903928571429 16.0665 -25.2583571428571 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1645 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 515 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 512 Number of spheres polar: 138, nonpolar: 311, out of current total: 512 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.36305 29.28577 6.78649 26.03544 -35.23546 -15.37023 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 284 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 244 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 128 Spheres center of coords (x y z): 18.8800934375 15.873175078125 -25.381672890625 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 2.08390938065714 Final number of output spheres is: 60 Number of polar spheres: 8 Number of nonpolar spheres: 47 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 28