usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): -17.8532692307692 -31.2208076923077 -64.4044615384615 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1692 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 630 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 630 Number of spheres polar: 198, nonpolar: 389, out of current total: 630 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -27.77386 -7.89154 -40.72136 -21.29230 -74.34426 -54.44000 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 207 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 175 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 104 Spheres center of coords (x y z): -18.4225843269231 -31.90216 -64.178844423077 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 3.83972951439973 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 26