usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 31.4058181818182 -1.49060606060606 25.2967878787879 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1878 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 887 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 887 Number of spheres polar: 166, nonpolar: 517, out of current total: 887 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 21.43027 41.38751 -11.47012 8.49131 15.29707 35.15456 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 299 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 249 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 216 Spheres center of coords (x y z): 33.4288183796296 -3.30799694444445 20.8668719907407 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.15091035340664 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 33