Distance from surface specified: 1.80 There are 33 ligand heavy atoms Ligand center of coords (x y z): 31.4058181818182 -1.49060606060606 25.2967878787879 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 18024 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 13763 WARNING: removing a crystallographic sphere that is distance 1.9382533374149 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 13423 Number of spheres polar: 6059, nonpolar: 6218, out of current total: 13423 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 17.41100 45.39380 -15.48200 12.48820 11.29720 39.28600 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1919 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 1041 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 1022 Spheres center of coords (x y z): 35.5436641878669 -2.78736653620352 23.4793084148728 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 12.3166115670748 Final number of output spheres is: 200 Number of polar spheres: 93 Number of nonpolar spheres: 99 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 32