usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 17.0815 -3.77238888888889 14.3501111111111 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1035 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 400 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 400 Number of spheres polar: 94, nonpolar: 237, out of current total: 400 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 7.08714 27.03354 -13.30458 6.18993 4.35210 24.24762 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 125 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 100 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 47 Spheres center of coords (x y z): 16.4960685106383 -3.75835574468085 14.3989736170213 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.80887751824693 Final number of output spheres is: 45 Number of polar spheres: 9 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 18