usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 29.5548947368421 36.7537894736842 38.5089473684211 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1382 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 448 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 448 Number of spheres polar: 143, nonpolar: 268, out of current total: 448 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 19.68279 39.42025 26.78044 46.75082 28.51464 48.49199 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 137 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 113 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 45 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 19