usefragsph not on
There are 20 ligand heavy atoms
Ligand center of coords (x y z): 29.82945 36.2715 39.0085
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1402
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 411
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 411
Number of spheres polar: 135, nonpolar: 248, out of current total: 411
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 19.90685 39.80418 26.41811 46.16454 29.10717 48.96636
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 206
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 175
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 88
Spheres center of coords (x y z): 29.7839690909091 36.2912846590909 38.6752278409091
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 1.80993805715671
Final number of output spheres is: 60
Number of polar spheres: 9
Number of nonpolar spheres: 47
Number of spheres that are near neither polar nor nonpolar receptor atoms: 4
Final number of spheres that are from crystallographic ligand: 20