usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 30.2399523809524 36.5688095238095 39.1374761904762 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1515 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 442 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 442 Number of spheres polar: 148, nonpolar: 271, out of current total: 442 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 20.26364 40.20892 26.95597 46.54189 29.13931 49.06857 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 131 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 106 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 51 Spheres center of coords (x y z): 30.0517909803922 36.690112745098 39.0077650980392 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.95662472703281 Final number of output spheres is: 45 Number of polar spheres: 6 Number of nonpolar spheres: 35 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 21