usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): 94.7092068965517 20.7092413793103 -4.08741379310345 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1585 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 544 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 543 Number of spheres polar: 143, nonpolar: 317, out of current total: 543 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 86.24384 104.68935 10.77599 30.60198 -14.08729 5.90281 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 206 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 180 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 133 Spheres center of coords (x y z): 98.0566608270676 19.9316214285714 -4.83589037593985 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.21652812711943 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 29