usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 22.97215 9.12975 114.3218 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1412 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 578 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 572 Number of spheres polar: 185, nonpolar: 331, out of current total: 572 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 12.98087 32.94915 -0.84546 19.12407 104.32448 124.30006 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 197 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 162 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 60 Spheres center of coords (x y z): 23.093779 9.325728 114.247136 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.89635913081905 Final number of output spheres is: 45 Number of polar spheres: 8 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 20