usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 77.20625 40.13425 69.984125 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1585 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 539 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 528 Number of spheres polar: 160, nonpolar: 319, out of current total: 528 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 67.21443 87.14141 30.13900 50.09850 59.99023 79.97859 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 307 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 247 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 100 Spheres center of coords (x y z): 76.8981398 39.8434277 69.9921473 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.80560592125792 Final number of output spheres is: 60 Number of polar spheres: 5 Number of nonpolar spheres: 52 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 24