usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 29.99445 36.7901 39.1195 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1254 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 359 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 359 Number of spheres polar: 129, nonpolar: 209, out of current total: 359 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 20.15569 39.80215 26.81061 46.74263 29.13439 49.06732 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 126 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 96 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 47 Spheres center of coords (x y z): 29.6157404255319 36.6754365957447 39.3107036170213 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.63441542507125 Final number of output spheres is: 45 Number of polar spheres: 7 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 20