usefragsph not on
There are 20 ligand heavy atoms
Ligand center of coords (x y z): 29.99445 36.7901 39.1195
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1254
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 359
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 359
Number of spheres polar: 129, nonpolar: 209, out of current total: 359
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 20.15569 39.80215 26.81061 46.74263 29.13439 49.06732
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 188
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 152
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 83
Spheres center of coords (x y z): 29.5629269879518 36.752665060241 39.3811421686747
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 1.73852013941727
Final number of output spheres is: 60
Number of polar spheres: 9
Number of nonpolar spheres: 47
Number of spheres that are near neither polar nor nonpolar receptor atoms: 4
Final number of spheres that are from crystallographic ligand: 20