usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 77.6144615384615 40.1164230769231 69.7340384615385 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1751 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 606 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 601 Number of spheres polar: 139, nonpolar: 393, out of current total: 601 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 67.66100 87.59998 30.12097 50.09400 59.80099 79.69079 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 337 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 283 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 190 Spheres center of coords (x y z): 80.2929651052631 42.4567095263158 71.4703291052632 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.79031236760737 Final number of output spheres is: 60 Number of polar spheres: 10 Number of nonpolar spheres: 49 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 26