usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): 7.38341176470588 4.83411764705882 22.3233529411765 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1339 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 771 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 771 Number of spheres polar: 257, nonpolar: 344, out of current total: 771 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.37836 17.35898 -5.12631 14.79320 12.33230 31.87471 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 397 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 341 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 286 Spheres center of coords (x y z): 7.5671144055944 4.63041132867133 19.1529304895105 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.87679858239597 Final number of output spheres is: 60 Number of polar spheres: 27 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 34