usefragsph not on There are 31 ligand heavy atoms Ligand center of coords (x y z): 7.1828064516129 4.74270967741935 22.2749032258065 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1263 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 770 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 770 Number of spheres polar: 209, nonpolar: 352, out of current total: 770 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.74778 17.03201 -5.20042 14.72000 12.37617 31.87171 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 425 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 372 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 348 Spheres center of coords (x y z): 6.27513123563219 5.23641057471264 20.1468624137931 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.51844398011308 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 31