usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 7.71878787878788 6.12315151515152 21.9532121212121 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1154 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 767 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 760 Number of spheres polar: 187, nonpolar: 338, out of current total: 760 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.21841 16.08792 -3.78101 16.03500 12.05866 31.91875 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 435 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 368 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 353 Spheres center of coords (x y z): 5.01410133144476 6.36438603399433 21.4284926912181 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.99409173118701 Final number of output spheres is: 60 Number of polar spheres: 28 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 33