usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): 19.0939 9.55446666666666 14.0123333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1177 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 593 WARNING: removing a crystallographic sphere that is distance 1.08182299846139 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 592 Number of spheres polar: 186, nonpolar: 276, out of current total: 592 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.15782 29.09271 -0.42242 18.88139 4.07821 24.00731 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 312 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 286 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 268 Spheres center of coords (x y z): 19.2742916044776 11.1097719029851 14.0895505970149 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.96018026962803 Final number of output spheres is: 60 Number of polar spheres: 34 Number of nonpolar spheres: 16 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 29