usefragsph not on
There are 41 ligand heavy atoms
Ligand center of coords (x y z): 6.53343902439024 20.8271707317073 7.74763414634146
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1363
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 755
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 752
Number of spheres polar: 242, nonpolar: 364, out of current total: 752
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -3.45111 16.44393 10.83125 30.81137 -2.24472 17.60050
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 375
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 327
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 307
Spheres center of coords (x y z): 6.57615381107492 19.3636821824104 6.86652986970685
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.14979797143682
Final number of output spheres is: 60
Number of polar spheres: 24
Number of nonpolar spheres: 26
Number of spheres that are near neither polar nor nonpolar receptor atoms: 10
Final number of spheres that are from crystallographic ligand: 41