usefragsph not on
There are 39 ligand heavy atoms
Ligand center of coords (x y z): 5.18802564102564 22.2060769230769 7.29730769230769
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1176
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 699
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 698
Number of spheres polar: 170, nonpolar: 360, out of current total: 698
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.81059 15.15071 12.29529 32.18132 -2.62198 17.07943
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 258
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 217
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 190
Spheres center of coords (x y z): 4.49746715789474 20.1582696842105 7.01940310526315
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.74384853363908
Final number of output spheres is: 45
Number of polar spheres: 10
Number of nonpolar spheres: 21
Number of spheres that are near neither polar nor nonpolar receptor atoms: 14
Final number of spheres that are from crystallographic ligand: 39