usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 7.02669696969697 5.04666666666667 22.6523333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1402 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 772 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 772 Number of spheres polar: 235, nonpolar: 383, out of current total: 772 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.96779 15.21691 -4.94091 15.02343 12.81268 32.53282 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 241 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 195 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 151 Spheres center of coords (x y z): 6.30612284768212 5.81100642384105 19.8137225165563 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.66686376346607 Final number of output spheres is: 45 Number of polar spheres: 14 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 33