usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 7.02669696969697 5.04666666666667 22.6523333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1402 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 772 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 772 Number of spheres polar: 235, nonpolar: 383, out of current total: 772 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.96779 15.21691 -4.94091 15.02343 12.81268 32.53282 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 395 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 344 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 291 Spheres center of coords (x y z): 6.00332580756014 5.82933975945017 20.7209265292096 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.96966763027639 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 33