usefragsph not on
There are 41 ligand heavy atoms
Ligand center of coords (x y z): 5.87431707317073 7.9770243902439 22.4584634146341
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1159
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 712
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 710
Number of spheres polar: 259, nonpolar: 248, out of current total: 710
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -3.85374 15.86316 -2.02132 17.96353 12.80309 32.42572
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 392
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 332
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 310
Spheres center of coords (x y z): 5.09862470967742 8.13981519354839 21.4715275483871
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.4681606316043
Final number of output spheres is: 60
Number of polar spheres: 18
Number of nonpolar spheres: 29
Number of spheres that are near neither polar nor nonpolar receptor atoms: 13
Final number of spheres that are from crystallographic ligand: 41