usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 7.334625 6.81546875 22.97553125 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1157 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 650 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 648 Number of spheres polar: 258, nonpolar: 236, out of current total: 648 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.62900 16.39555 -3.15004 16.80832 13.01467 32.90059 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 224 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 182 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 158 Spheres center of coords (x y z): 6.27789575949367 6.07015164556962 21.0639867721519 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.03435829049871 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 32