usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 7.5666875 6.98875 23.23278125 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1038 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 545 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 543 Number of spheres polar: 204, nonpolar: 227, out of current total: 543 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.09467 17.55429 -2.98090 16.88682 13.41483 33.18210 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 207 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 173 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 152 Spheres center of coords (x y z): 5.62067217105263 6.13999118421052 22.0230563157895 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.02073946875774 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 32