usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 7.5666875 6.98875 23.23278125 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1038 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 545 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 543 Number of spheres polar: 204, nonpolar: 227, out of current total: 543 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.09467 17.55429 -2.98090 16.88682 13.41483 33.18210 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 317 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 274 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 216 Spheres center of coords (x y z): 6.33800953703704 7.27974675925926 21.4645096759259 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.46400134002588 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 38 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 32