usefragsph not on There are 36 ligand heavy atoms Ligand center of coords (x y z): 7.38425 5.73972222222222 21.9691666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 984 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 569 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 569 Number of spheres polar: 151, nonpolar: 288, out of current total: 569 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.61561 16.84036 -4.24891 15.55500 12.25475 31.94613 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 306 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 270 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 222 Spheres center of coords (x y z): 6.23876716216216 6.21124671171171 21.0276272972973 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.18155897244636 Final number of output spheres is: 60 Number of polar spheres: 8 Number of nonpolar spheres: 40 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 36