usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 7.56169696969697 5.22730303030303 22.2599393939394 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1338 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 798 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 797 Number of spheres polar: 288, nonpolar: 323, out of current total: 797 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.32748 17.53888 -4.73968 15.19676 12.33873 31.95273 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 250 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 195 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 154 Spheres center of coords (x y z): 6.9055185064935 6.54368720779221 19.8407348701299 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.58246566006642 Final number of output spheres is: 45 Number of polar spheres: 14 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 33