usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): 7.5516 6.15457142857143 22.0549714285714 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 952 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 604 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 602 Number of spheres polar: 151, nonpolar: 260, out of current total: 602 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.43978 17.49686 -3.81093 16.14377 12.05688 31.80721 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 342 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 296 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 258 Spheres center of coords (x y z): 6.14661193798449 6.1816822868217 20.6356099612403 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.76303511045984 Final number of output spheres is: 60 Number of polar spheres: 13 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 20 Final number of spheres that are from crystallographic ligand: 35