usefragsph not on There are 36 ligand heavy atoms Ligand center of coords (x y z): 6.25322222222222 5.11716666666667 22.3329166666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1074 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 682 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 676 Number of spheres polar: 224, nonpolar: 300, out of current total: 676 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -3.72881 14.58470 -4.80505 15.07952 12.48211 32.13052 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 239 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 198 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 182 Spheres center of coords (x y z): 4.64534368131868 4.88674230769231 20.5103312087912 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.02149308593902 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 36