usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 7.63003125 6.6915625 22.7405 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1253 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 738 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 734 Number of spheres polar: 304, nonpolar: 264, out of current total: 734 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.32688 17.53369 -3.26231 16.67488 12.83371 32.69736 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 390 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 340 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 318 Spheres center of coords (x y z): 5.59018927672956 5.67418902515723 21.357711509434 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.66461160503083 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 32