usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 7.7134375 6.5503125 22.52765625 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 961 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 612 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 610 Number of spheres polar: 174, nonpolar: 249, out of current total: 610 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.23449 17.70719 -3.17563 16.53501 12.64408 32.20287 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 226 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 187 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 148 Spheres center of coords (x y z): 6.67066763513513 7.43029527027028 20.252614527027 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.41713013932478 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 32