usefragsph not on There are 43 ligand heavy atoms Ligand center of coords (x y z): 21.3487209302326 30.3085581395349 61.0552790697674 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1350 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 724 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 723 Number of spheres polar: 200, nonpolar: 364, out of current total: 723 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 11.37069 31.11416 20.33603 40.27340 51.11465 70.96057 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 229 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 185 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 154 Spheres center of coords (x y z): 21.5916780519481 30.191197987013 59.3541208441559 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.25232052816545 Final number of output spheres is: 45 Number of polar spheres: 7 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 43