usefragsph not on There are 43 ligand heavy atoms Ligand center of coords (x y z): 21.3487209302326 30.3085581395349 61.0552790697674 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1350 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 724 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 723 Number of spheres polar: 200, nonpolar: 364, out of current total: 723 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 11.37069 31.11416 20.33603 40.27340 51.11465 70.96057 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 381 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 318 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 262 Spheres center of coords (x y z): 21.1533704198473 30.9086720992367 58.9989776335878 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.38597894069543 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 43