usefragsph not on There are 39 ligand heavy atoms Ligand center of coords (x y z): 21.0423076923077 5.87271794871795 57.1029230769231 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1165 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 739 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 734 Number of spheres polar: 249, nonpolar: 315, out of current total: 734 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 11.20136 30.83835 -4.11703 15.80817 47.24488 67.09332 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 257 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 209 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 190 Spheres center of coords (x y z): 22.4114231052632 5.64263805263158 58.5384515789474 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.32541397607834 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 39