usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): 8.24706666666666 6.18523333333333 22.2528 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1263 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 728 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 727 Number of spheres polar: 244, nonpolar: 307, out of current total: 727 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -1.65129 18.06064 -3.80199 16.09585 12.33254 32.22668 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 381 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 325 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 294 Spheres center of coords (x y z): 6.2060500680272 6.28471636054421 20.3454083333333 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.5391671579651 Final number of output spheres is: 60 Number of polar spheres: 26 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 30