usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): 8.23786666666667 5.83236666666667 21.9644333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1168 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 632 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 629 Number of spheres polar: 196, nonpolar: 247, out of current total: 629 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -1.74401 18.18025 -4.04000 15.45608 11.97108 31.76077 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 351 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 306 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 283 Spheres center of coords (x y z): 6.24613363957597 6.78021197879859 21.05708 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.17068772939692 Final number of output spheres is: 60 Number of polar spheres: 21 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 30