usefragsph not on There are 36 ligand heavy atoms Ligand center of coords (x y z): 7.81447222222222 6.05722222222222 21.4735833333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1102 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 652 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 651 Number of spheres polar: 193, nonpolar: 301, out of current total: 651 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.17465 17.80535 -3.90620 16.04672 11.67064 31.42419 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 359 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 308 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 286 Spheres center of coords (x y z): 6.26047125874126 6.14915171328671 20.6764052447552 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.16039447189747 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 36