usefragsph not on There are 31 ligand heavy atoms Ligand center of coords (x y z): 7.96667741935484 6.04145161290323 22.0154193548387 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1190 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 739 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 736 Number of spheres polar: 253, nonpolar: 288, out of current total: 736 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -1.99642 17.94154 -3.95765 15.95448 12.07120 32.00601 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 397 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 339 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 299 Spheres center of coords (x y z): 6.4499618729097 6.13779210702341 20.2136342809364 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.3525113885848 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 17 Final number of spheres that are from crystallographic ligand: 31