usefragsph not on There are 31 ligand heavy atoms Ligand center of coords (x y z): -3.92009677419355 10.5866451612903 23.1466451612903 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1100 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 716 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 710 Number of spheres polar: 263, nonpolar: 258, out of current total: 710 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -13.91147 5.84457 0.62230 20.41357 13.21701 33.09507 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 377 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 322 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 249 Spheres center of coords (x y z): -3.53771401606426 12.2444565461847 21.629203935743 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.96906096393893 Final number of output spheres is: 60 Number of polar spheres: 9 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 21 Final number of spheres that are from crystallographic ligand: 31