usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 8.52140740740741 42.0440740740741 61.0985925925926 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1075 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 596 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 594 Number of spheres polar: 204, nonpolar: 237, out of current total: 594 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -1.47672 18.37141 32.05770 51.99273 51.23300 70.93612 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 210 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 170 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 151 Spheres center of coords (x y z): 6.74877940397351 40.9291743046358 59.474368807947 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.20249943523763 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 27